This paper presents the Standalone Neural ODE (sNODE), a continuous-depth neural ODE model capable of describing a full deep neural network. This uses a novel nonlinear conjugate gradient (NCG) descent optimization scheme for training, where the Sobolev gradient can be incorporated to improve smoothness of model weights. We also present a general formulation of the neural sensitivity problem and show how it is used in the NCG training. The sensitivity analysis provides a reliable measure of uncertainty propagation throughout a network, and can be used to study model robustness and to generate adversarial attacks. Our evaluations demonstrate that our novel formulations lead to increased robustness and performance as compared to ResNet models, and that it opens up for new opportunities for designing and developing machine learning with improved explainability.