Physics-informed neural networks (PINNs) have lately received significant attention as a representative deep learning-based technique for solving partial differential equations (PDEs). Most fully connected network-based PINNs use automatic differentiation to construct loss functions that suffer from slow convergence and difficult boundary enforcement. In addition, although convolutional neural network (CNN)-based PINNs can significantly improve training efficiency, CNNs have difficulty in dealing with irregular geometries with unstructured meshes. Therefore, we propose a novel framework based on graph neural networks (GNNs) and radial basis function finite difference (RBF-FD). We introduce GNNs into physics-informed learning to better handle irregular domains with unstructured meshes. RBF-FD is used to construct a high-precision difference format of the differential equations to guide model training. Finally, we perform numerical experiments on Poisson and wave equations on irregular domains. We illustrate the generalizability, accuracy, and efficiency of the proposed algorithms on different PDE parameters, numbers of collection points, and several types of RBFs.