This article explores the latest Convolutional Neural Networks (CNNs) for cloud detection aboard hyperspectral satellites. The performance of the latest 1D CNN (1D-Justo-LiuNet) and two recent 2D CNNs (nnU-net and 2D-Justo-UNet-Simple) for cloud segmentation and classification is assessed. Evaluation criteria include precision and computational efficiency for in-orbit deployment. Experiments utilize NASA's EO-1 Hyperion data, with varying spectral channel numbers after Principal Component Analysis. Results indicate that 1D-Justo-LiuNet achieves the highest accuracy, outperforming 2D CNNs, while maintaining compactness with larger spectral channel sets, albeit with increased inference times. However, the performance of 1D CNN degrades with significant channel reduction. In this context, the 2D-Justo-UNet-Simple offers the best balance for in-orbit deployment, considering precision, memory, and time costs. While nnU-net is suitable for on-ground processing, deployment of lightweight 1D-Justo-LiuNet is recommended for high-precision applications. Alternatively, lightweight 2D-Justo-UNet-Simple is recommended for balanced costs between timing and precision in orbit.