Score-based diffusion models have emerged as one of the most promising frameworks for deep generative modelling. In this work we conduct a systematic comparison and theoretical analysis of different approaches to learning conditional probability distributions with score-based diffusion models. In particular, we prove results which provide a theoretical justification for one of the most successful estimators of the conditional score. Moreover, we introduce a multi-speed diffusion framework, which leads to a new estimator for the conditional score, performing on par with previous state-of-the-art approaches. Our theoretical and experimental findings are accompanied by an open source library MSDiff which allows for application and further research of multi-speed diffusion models.