As one of the major sources in speech variability, accents have posed a grand challenge to the robustness of speech recognition systems. In this paper, our goal is to build a unified end-to-end speech recognition system that generalizes well across accents. For this purpose, we propose a novel pre-training framework AIPNet based on generative adversarial nets (GAN) for accent-invariant representation learning: Accent Invariant Pre-training Networks. We pre-train AIPNet to disentangle accent-invariant and accent-specific characteristics from acoustic features through adversarial training on accented data for which transcriptions are not necessarily available. We further fine-tune AIPNet by connecting the accent-invariant module with an attention-based encoder-decoder model for multi-accent speech recognition. In the experiments, our approach is compared against four baselines including both accent-dependent and accent-independent models. Experimental results on 9 English accents show that the proposed approach outperforms all the baselines by 2.3 \sim 4.5% relative reduction on average WER when transcriptions are available in all accents and by 1.6 \sim 6.1% relative reduction when transcriptions are only available in US accent.