Bearing fault identification and analysis is an important research area in the field of machinery fault diagnosis. Aiming at the common faults of rolling bearings, we propose a data-driven diagnostic algorithm based on the characteristics of bearing vibrations called multi-size kernel based adaptive convolutional neural network (MSKACNN). Using raw bearing vibration signals as the inputs, MSKACNN provides vibration feature learning and signal classification capabilities to identify and analyze bearing faults. Ball mixing is a ball bearing production quality problem that is difficult to identify using traditional frequency domain analysis methods since it requires high frequency resolutions of the measurement signals and results in a long analyzing time. The proposed MSKACNN is shown to improve the efficiency and accuracy of ball mixing diagnosis. To further demonstrate the effectiveness of MSKACNN in bearing fault identification, a bearing vibration data acquisition system was developed, and vibration signal acquisition was performed on rolling bearings under five different fault conditions including ball mixing. The resulting datasets were used to analyze the performance of our proposed model. To validate the adaptive ability of MSKACNN, fault test data from the Case Western Reserve University Bearing Data Center were also used. Test results show that MSKACNN can identify the different bearing conditions with high accuracy with high generalization ability. We presented an implementation of the MSKACNN as a lightweight module for a real-time bearing fault diagnosis system that is suitable for production.