Manifold regularization is a commonly used technique in semi-supervised learning. It guides the learning process by enforcing that the classification rule we find is smooth with respect to the data-manifold. In this paper we present sample and Rademacher complexity bounds for this method. We first derive distribution \emph{independent} sample complexity bounds by analyzing the general framework of adding a data dependent regularization term to a supervised learning process. We conclude that for these types of methods one can expect that the sample complexity improves at most by a constant, which depends on the hypothesis class. We then derive Rademacher complexities bounds which allow for a distribution \emph{dependent} complexity analysis. We illustrate how our bounds can be used for choosing an appropriate manifold regularization parameter. With our proposed procedure there is no need to use an additional labeled validation set.