3DBGrowth: volumetric vertebrae segmentation and reconstruction in magnetic resonance imaging

Segmentation of medical images is critical for making several processes of analysis and classification more reliable. With the growing number of people presenting back pain and related problems, the semi-automatic segmentation and 3D reconstruction of vertebral bodies became even more important to support decision making. A 3D reconstruction allows a fast and objective analysis of each vertebrae condition, which may play a major role in surgical planning and evaluation of suitable treatments. In this paper, we propose 3DBGrowth, which develops a 3D reconstruction over the efficient Balanced Growth method for 2D images. We also take advantage of the slope coefficient from the annotation time to reduce the total number of annotated slices, reducing the time spent on manual annotation. We show experimental results on a representative dataset with 17 MRI exams demonstrating that our approach significantly outperforms the competitors and, on average, only 37% of the total slices with vertebral body content must be annotated without losing performance/accuracy. Compared to the state-of-the-art methods, we have achieved a Dice Score gain of over 5% with comparable processing time. Moreover, 3DBGrowth works well with imprecise seed points, which reduces the time spent on manual annotation by the specialist.

BGrowth: an efficient approach for the segmentation of vertebral compression fractures in magnetic resonance imaging

Segmentation of medical images is a critical issue: several process of analysis and classification rely on this segmentation. With the growing number of people presenting back pain and problems related to it, the automatic or semi-automatic segmentation of fractured vertebral bodies became a challenging task. In general, those fractures present several regions with non-homogeneous intensities and the dark regions are quite similar to the structures nearby. Aimed at overriding this challenge, in this paper we present a semi-automatic segmentation method, called Balanced Growth (BGrowth). The experimental results on a dataset with 102 crushed and 89 normal vertebrae show that our approach significantly outperforms well-known methods from the literature. We have achieved an accuracy up to 95% while keeping acceptable processing time performance, that is equivalent to the state-of-the-artmethods. Moreover, BGrowth presents the best results even with a rough (sloppy) manual annotation (seed points).