Picture for Mahfuza Sharmin

Mahfuza Sharmin

TF-MoDISco v0.4.4.2-alpha: Technical Note

Add code
Oct 31, 2018
Avanti Shrikumar, Katherine Tian, Anna Shcherbina, Žiga Avsec, Abhimanyu Banerjee, Mahfuza Sharmin, Surag Nair, Anshul Kundaje
Figure 1 for TF-MoDISco v0.4.4.2-alpha: Technical Note
Figure 2 for TF-MoDISco v0.4.4.2-alpha: Technical Note
Figure 3 for TF-MoDISco v0.4.4.2-alpha: Technical Note
Figure 4 for TF-MoDISco v0.4.4.2-alpha: Technical Note

TF-MoDISco (Transcription Factor Motif Discovery from Importance Scores) is an algorithm for identifying motifs from basepair-level importance scores computed on genomic sequence data. This paper describes the methods behind TF-MoDISco version 0.4.4.2-alpha (available at https://github.com/kundajelab/tfmodisco/tree/v0.4.2.2-alpha).

* Implementation available at https://github.com/kundajelab/tfmodisco/tree/v0.4.2.2-alpha 
Viaarxiv icon
Github IconAccess Paper or Ask Questions
Twitter IconFacebook IconLinkedin IconWhatsapp IconMessenger Icon