Gaze-Assisted Medical Image Segmentation

The annotation of patient organs is a crucial part of various diagnostic and treatment procedures, such as radiotherapy planning. Manual annotation is extremely time-consuming, while its automation using modern image analysis techniques has not yet reached levels sufficient for clinical adoption. This paper investigates the idea of semi-supervised medical image segmentation using human gaze as interactive input for segmentation correction. In particular, we fine-tuned the Segment Anything Model in Medical Images (MedSAM), a public solution that uses various prompt types as additional input for semi-automated segmentation correction. We used human gaze data from reading abdominal images as a prompt for fine-tuning MedSAM. The model was validated on a public WORD database, which consists of 120 CT scans of 16 abdominal organs. The results of the gaze-assisted MedSAM were shown to be superior to the results of the state-of-the-art segmentation models. In particular, the average Dice coefficient for 16 abdominal organs was 85.8%, 86.7%, 81.7%, and 90.5% for nnUNetV2, ResUNet, original MedSAM, and our gaze-assisted MedSAM model, respectively.

Refining Joint Text and Source Code Embeddings for Retrieval Task with Parameter-Efficient Fine-Tuning

The latest developments in Natural Language Processing (NLP) have demonstrated remarkable progress in a code-text retrieval problem. As the Transformer-based models used in this task continue to increase in size, the computational costs and time required for end-to-end fine-tuning become substantial. This poses a significant challenge for adapting and utilizing these models when computational resources are limited. Motivated by these concerns, we propose a fine-tuning framework that leverages Parameter-Efficient Fine-Tuning (PEFT) techniques. Moreover, we adopt contrastive learning objectives to improve the quality of bimodal representations learned by transformer models. Additionally, for PEFT methods we provide extensive benchmarking, the lack of which has been highlighted as a crucial problem in the literature. Based on the thorough experimentation with the CodeT5+ model conducted on two datasets, we demonstrate that the proposed fine-tuning framework has the potential to improve code-text retrieval performance by tuning only 0.4% parameters at most.