Abstract:We introduce a collection of datasets from fundamental physics research -- including particle physics, astroparticle physics, and hadron- and nuclear physics -- for supervised machine learning studies. These datasets, containing hadronic top quarks, cosmic-ray induced air showers, phase transitions in hadronic matter, and generator-level histories, are made public to simplify future work on cross-disciplinary machine learning and transfer learning in fundamental physics. Based on these data, we present a simple yet flexible graph-based neural network architecture that can easily be applied to a wide range of supervised learning tasks in these domains. We show that our approach reaches performance close to state-of-the-art dedicated methods on all datasets. To simplify adaptation for various problems, we provide easy-to-follow instructions on how graph-based representations of data structures, relevant for fundamental physics, can be constructed and provide code implementations for several of them. Implementations are also provided for our proposed method and all reference algorithms.