Vecchia Gaussian Process Ensembles on Internal Representations of Deep Neural Networks

For regression tasks, standard Gaussian processes (GPs) provide natural uncertainty quantification, while deep neural networks (DNNs) excel at representation learning. We propose to synergistically combine these two approaches in a hybrid method consisting of an ensemble of GPs built on the output of hidden layers of a DNN. GP scalability is achieved via Vecchia approximations that exploit nearest-neighbor conditional independence. The resulting deep Vecchia ensemble not only imbues the DNN with uncertainty quantification but can also provide more accurate and robust predictions. We demonstrate the utility of our model on several datasets and carry out experiments to understand the inner workings of the proposed method.

Variational sparse inverse Cholesky approximation for latent Gaussian processes via double Kullback-Leibler minimization

To achieve scalable and accurate inference for latent Gaussian processes, we propose a variational approximation based on a family of Gaussian distributions whose covariance matrices have sparse inverse Cholesky (SIC) factors. We combine this variational approximation of the posterior with a similar and efficient SIC-restricted Kullback-Leibler-optimal approximation of the prior. We then focus on a particular SIC ordering and nearest-neighbor-based sparsity pattern resulting in highly accurate prior and posterior approximations. For this setting, our variational approximation can be computed via stochastic gradient descent in polylogarithmic time per iteration. We provide numerical comparisons showing that the proposed double-Kullback-Leibler-optimal Gaussian-process approximation (DKLGP) can sometimes be vastly more accurate than alternative approaches such as inducing-point and mean-field approximations at similar computational complexity.

Scalable Bayesian Optimization Using Vecchia Approximations of Gaussian Processes

Bayesian optimization is a technique for optimizing black-box target functions. At the core of Bayesian optimization is a surrogate model that predicts the output of the target function at previously unseen inputs to facilitate the selection of promising input values. Gaussian processes (GPs) are commonly used as surrogate models but are known to scale poorly with the number of observations. We adapt the Vecchia approximation, a popular GP approximation from spatial statistics, to enable scalable high-dimensional Bayesian optimization. We develop several improvements and extensions, including training warped GPs using mini-batch gradient descent, approximate neighbor search, and selecting multiple input values in parallel. We focus on the use of our warped Vecchia GP in trust-region Bayesian optimization via Thompson sampling. On several test functions and on two reinforcement-learning problems, our methods compared favorably to the state of the art.