The R-Vessel-X Project

1) Objectives: This technical report presents a synthetic summary and the principal outcomes of the project R-Vessel-X ("Robust vascular network extraction and understanding within hepatic biomedical images") funded by the French Agence Nationale de la Recherche, and developed between 2019 and 2023. 2) Material and methods: We used datasets and tools publicly available such as IRCAD, Bullitt or VascuSynth toobtain real or synthetic angiographic images. The main contributions lie in the field of 3D angiographic image analysis: filtering, segmentation, modeling and simulation, with a specific focus on the liver. 3) Results: We paid a particular attention to open-source software diffusion of the developed methods, by means of 3D Slicer plugins for the liver anatomy segmentation (SlicerRVXLiverSegmentation) and vesselness filtering (Slicer-RVXVesselnessFilters), and an online demo for the generation of synthetic and realistic vessels in 2D and 3D (OpenCCO). 4) Conclusion: The R-Vessel-X project provided extensive research outcomes, covering various topics related to 3D angiographic image analysis, such as filtering, segmentation, modeling and simulation. We also developed open-source and free softwares so that the research communities in biomedical engineering can use these results in their future research.

Robust reconstructions by multi-scale/irregular tangential covering

In this paper, we propose an original manner to employ a tangential cover algorithm - minDSS - in order to geometrically reconstruct noisy digital contours. To do so, we exploit the representation of graphical objects by maximal primitives we have introduced in previous works. By calculating multi-scale and irregular isothetic representations of the contour, we obtained 1-D (one-dimensional) intervals, and achieved afterwards a decomposition into maximal line segments or circular arcs. By adapting minDSS to this sparse and irregular data of 1-D intervals supporting the maximal primitives, we are now able to reconstruct the input noisy objects into cyclic contours made of lines or arcs with a minimal number of primitives. In this work, we explain our novel complete pipeline, and present its experimental evaluation by considering both synthetic and real image data. We also show that this is a robust approach, with respect to selected references from state-of-the-art, and by considering a multi-scale noise evaluation process.