Current state-of-the-art dynamical models, such as Mamba, assume the same level of noisiness for all elements of a given sequence, which limits their performance on noisy temporal data. In this paper, we introduce the $\alpha$-Alternator, a novel generative model for time-dependent data that dynamically adapts to the complexity introduced by varying noise levels in sequences. The $\alpha$-Alternator leverages the Vendi Score (VS), a flexible similarity-based diversity metric, to adjust, at each time step $t$, the influence of the sequence element at time $t$ and the latent representation of the dynamics up to that time step on the predicted future dynamics. This influence is captured by a parameter that is learned and shared across all sequences in a given dataset. The sign of this parameter determines the direction of influence. A negative value indicates a noisy dataset, where a sequence element that increases the VS is considered noisy, and the model relies more on the latent history when processing that element. Conversely, when the parameter is positive, a sequence element that increases the VS is considered informative, and the $\alpha$-Alternator relies more on this new input than on the latent history when updating its predicted latent dynamics. The $\alpha$-Alternator is trained using a combination of observation masking and Alternator loss minimization. Masking simulates varying noise levels in sequences, enabling the model to be more robust to these fluctuations and improving its performance in trajectory prediction, imputation, and forecasting. Our experimental results demonstrate that the $\alpha$-Alternator outperforms both Alternators and state-of-the-art state-space models across neural decoding and time-series forecasting benchmarks.