Aerial package transportation often requires complex spatial and temporal specifications to be satisfied in order to ensure safe and timely delivery from one point to another. It is usually efficient to transport versatile payloads using multiple UAVs that can work collaboratively to achieve the desired task. The complex temporal specifications can be handled coherently by applying Signal Temporal Logic (STL) to dynamical systems. This paper addresses the problem of waypoint navigation of a multi-UAV payload system under temporal specifications using higher-order time-varying control barrier functions (HOCBFs). The complex nonlinear system of relative degree two is transformed into a simple linear system using input-output feedback linearization. An optimization-based control law is then derived to achieve the temporal waypoint navigation of the payload. The controller's efficacy and real-time implementability are demonstrated by simulating a package delivery scenario inside a high-fidelity Gazebo simulation environment.