Quantum Annealers (QAs) operate as single-instruction machines, lacking a SWAP operation to overcome limited qubit connectivity. Consequently, multiple physical qubits are chained to form a program qubit with higher connectivity, resulting in a drastically diminished effective QA capacity by up to 33x. We observe that in QAs: (a) chain lengths exhibit a power-law distribution, a few dominant chains holding substantially more qubits than others; and (b) about 25% of physical qubits remain unused, getting isolated between these chains. We propose Skipper, a software technique that enhances the capacity and fidelity of QAs by skipping dominant chains and substituting their program qubit with two readout results. Using a 5761-qubit QA, we demonstrate that Skipper can tackle up to 59% (Avg. 28%) larger problems when eleven chains are skipped. Additionally, Skipper can improve QA fidelity by up to 44% (Avg. 33%) when cutting five chains (32 runs). Users can specify up to eleven chain cuts in Skipper, necessitating about 2,000 distinct quantum executable runs. To mitigate this, we introduce Skipper-G, a greedy scheme that skips sub-problems less likely to hold the global optimum, executing a maximum of 23 quantum executables with eleven chain trims. Skipper-G can boost QA fidelity by up to 41% (Avg. 29%) when cutting five chains (11 runs).