Frequency diverse array multiple-input multiple-output (FDA-MIMO) radar differs from the traditional phased array (PA) radar, and can form range-angle-dependent beampattern and differentiate between closely spaced targets sharing the same angle but occupying distinct range cells. In the FDA-MIMO radar, target range estimation is achieved by employing a subtle frequency variation between adjacent array antennas, so the estimation performance is degraded severely in a practical scenario with frequency offset. In this paper, the range-angle estimation problem for FDA-MIMO radar is considered with frequency offsets in both transmitting and receiving arrays. First, we build a system model for the FDA-MIMO radar with transmitting and receiving frequency offsets. Then, the frequency offset is transferred into an equalized additional noise. The noise characteristics are analyzed in detail theoretically, together with the influence on the range-angle estimation. Moreover, since the effect of the transmitting frequency offset is similar to additional colored noise, denoising algorithms are introduced to mitigate the performance deterioration caused by the frequency offset. Finally, Cram\'{e}r-Rao lower bounds (CRLB) for the range-angle estimation are derived in the scenario with the frequency offsets. Simulation results show the analysis of frequency offset and the corresponding estimation performance using different algorithms.