Generating safe behaviors for autonomous systems is important as they continue to be deployed in the real world, especially around people. In this work, we focus on developing a novel safe controller for systems where there are multiple sources of uncertainty. We formulate a novel multimodal safe control method, called the Multimodal Safe Set Algorithm (MMSSA) for the case where the agent has uncertainty over which discrete mode the system is in, and each mode itself contains additional uncertainty. To our knowledge, this is the first energy-function-based safe control method applied to systems with multimodal uncertainty. We apply our controller to a simulated human-robot interaction where the robot is uncertain of the human's true intention and each potential intention has its own additional uncertainty associated with it, since the human is not a perfectly rational actor. We compare our proposed safe controller to existing safe control methods and find that it does not impede the system performance (i.e. efficiency) while also improving the safety of the system.