Robotic mapping is attractive in many science applications that involve environmental surveys. This paper presents a system for localization and mapping of sparsely distributed surface features such as precariously balanced rocks (PBRs), whose geometric fragility (stability) parameters provide valuable information on earthquake processes. With geomorphology as the test domain, we carry out a lawnmower search pattern using an Unpiloted Aerial Vehicle (UAV) equipped with a GPS module, stereo camera, and onboard computers. Once a target is detected by a deep neural network, we track its bounding box in the image coordinates by applying a Kalman filter that fuses the deep learning detection with KLT tracking. The target is localized in world coordinates using depth filtering where a set of 3D points are filtered by object bounding boxes from different camera perspectives. The 3D points also provide a strong prior on target shape, which is used for UAV path planning to accurately map the target using RGBD SLAM. After target mapping, the UAS resumes the lawnmower search pattern to locate the next target. Our end goal is a real-time mapping methodology for sparsely distributed surface features on earth or on extraterrestrial surfaces.