Graph representation learning plays an important role in many graph mining applications, but learning embeddings of large-scale graphs remains a problem. Recent works try to improve scalability via graph summarization -- i.e., they learn embeddings on a smaller summary graph, and then restore the node embeddings of the original graph. However, all existing works depend on heuristic designs and lack theoretical analysis. Different from existing works, we contribute an in-depth theoretical analysis of three specific embedding learning methods based on introduced kernel matrix, and reveal that learning embeddings via graph summarization is actually learning embeddings on a approximate graph constructed by the configuration model. We also give analysis about approximation error. To the best of our knowledge, this is the first work to give theoretical analysis of this approach. Furthermore, our analysis framework gives interpretation of some existing methods and provides great insights for future work on this problem.