Driving cycles are a set of driving conditions and are crucial for the existing emission estimation model to evaluate vehicle performance, fuel efficiency, and emissions, by matching them with average speed to calculate the operating modes, such as braking, idling, and cruising. While existing emission estimation models, such as the Motor Vehicle Emission Simulator (MOVES), are powerful tools, their reliance on predefined driving cycles can be limiting, as these cycles often do not accurately represent regional driving conditions, making the models less effective for city-wide analyses. To solve this problem, this paper proposes a modular neural network (NN)-based framework to estimate operating mode distributions bypassing the driving cycle development phase, utilizing macroscopic variables such as speed, flow, and link infrastructure attributes. The proposed method is validated using a well-calibrated microsimulation model of Brookline MA, the United States. The results indicate that the proposed framework outperforms the operating mode distribution calculated by MOVES based on default driving cycles, providing a closer match to the actual operating mode distribution derived from trajectory data. Specifically, the proposed model achieves an average RMSE of 0.04 in predicting operating mode distribution, compared to 0.08 for MOVES. The average error in emission estimation across pollutants is 8.57% for the proposed method, lower than the 32.86% error for MOVES. In particular, for the estimation of CO2, the proposed method has an error of just 4%, compared to 35% for MOVES. The proposed model can be utilized for real-time emissions monitoring by providing rapid and accurate emissions estimates with easily accessible inputs.