Deformable Object Manipulation (DOM) remains a critical challenge in robotics due to the complexities of developing suitable model-based control strategies. Deformable Tool Manipulation (DTM) further complicates this task by introducing additional uncertainties between the robot and its environment. While humans effortlessly manipulate deformable tools using touch and experience, robotic systems struggle to maintain stability and precision. To address these challenges, we present a novel State-Adaptive Koopman LQR (SA-KLQR) control framework for real-time deformable tool manipulation, demonstrated through a case study in environmental swab sampling for food safety. This method leverages Koopman operator-based control to linearize nonlinear dynamics while adapting to state-dependent variations in tool deformation and contact forces. A tactile-based feedback system dynamically estimates and regulates the swab tool's angle, contact pressure, and surface coverage, ensuring compliance with food safety standards. Additionally, a sensor-embedded contact pad monitors force distribution to mitigate tool pivoting and deformation, improving stability during dynamic interactions. Experimental results validate the SA-KLQR approach, demonstrating accurate contact angle estimation, robust trajectory tracking, and reliable force regulation. The proposed framework enhances precision, adaptability, and real-time control in deformable tool manipulation, bridging the gap between data-driven learning and optimal control in robotic interaction tasks.