Deep Neural Generative Model of Functional MRI Images for Psychiatric Disorder Diagnosis

Accurate diagnosis of psychiatric disorders plays a critical role in improving quality of life for patients and potentially supports the development of new treatments. Many studies have been conducted on machine learning techniques that seek brain imaging data for specific biomarkers of disorders. These studies have encountered the following dilemma: An end-to-end classification overfits to a small number of high-dimensional samples but unsupervised feature-extraction has the risk of extracting a signal of no interest. In addition, such studies often provided only diagnoses for patients without presenting the reasons for these diagnoses. This study proposed a deep neural generative model of resting-state functional magnetic resonance imaging (fMRI) data. The proposed model is conditioned by the assumption of the subject's state and estimates the posterior probability of the subject's state given the imaging data, using Bayes' rule. This study applied the proposed model to diagnose schizophrenia and bipolar disorders. Diagnosis accuracy was improved by a large margin over competitive approaches, namely a support vector machine, logistic regression, and multilayer perceptron with or without unsupervised feature-extractors in addition to a Gaussian mixture model. The proposed model visualizes brain regions largely related to the disorders, thus motivating further biological investigation.