Persistence kernels for classification: A comparative study

The aim of the present work is a comparative study of different persistence kernels applied to various classification problems. After some necessary preliminaries on homology and persistence diagrams, we introduce five different kernels that are then used to compare their performances of classification on various datasets. We also provide the Python codes for the reproducibility of results.

Reducing the Gibbs effect in multimodal medical imaging by the Fake Nodes Approach

It is a common practice in multimodal medical imaging to undersample the anatomically-derived segmentation images to measure the mean activity of a co-acquired functional image. This practice avoids the resampling-related Gibbs effect that would occur in oversampling the functional image. As sides effect, waste of time and efforts are produced since the anatomical segmentation at full resolution is performed in many hours of computations or manual work. In this work we explain the commonly-used resampling methods and give errors bound in the cases of continuous and discontinuous signals. Then we propose a Fake Nodes scheme for image resampling designed to reduce the Gibbs effect when oversampling the functional image. This new approach is compared to the traditional counterpart in two significant experiments, both showing that Fake Nodes resampling gives smaller errors.

Oversampling errors in multimodal medical imaging are due to the Gibbs effect

To analyse multimodal 3-dimensional medical images, interpolation is required for resampling which - unavoidably - introduces an interpolation error. In this work we consider three segmented 3-dimensional images resampled with three different neuroimaging software tools for comparing undersampling and oversampling strategies and to identify where the oversampling error lies. The results indicate that undersampling to the lowest image size is advantageous in terms of mean value per segment errors and that the oversampling error is larger where the gradient is steeper, showing a Gibbs effect.