MRI-based and metabolomics-based age scores act synergetically for mortality prediction shown by multi-cohort federated learning

Biological age scores are an emerging tool to characterize aging by estimating chronological age based on physiological biomarkers. Various scores have shown associations with aging-related outcomes. This study assessed the relation between an age score based on brain MRI images (BrainAge) and an age score based on metabolomic biomarkers (MetaboAge). We trained a federated deep learning model to estimate BrainAge in three cohorts. The federated BrainAge model yielded significantly lower error for age prediction across the cohorts than locally trained models. Harmonizing the age interval between cohorts further improved BrainAge accuracy. Subsequently, we compared BrainAge with MetaboAge using federated association and survival analyses. The results showed a small association between BrainAge and MetaboAge as well as a higher predictive value for the time to mortality of both scores combined than for the individual scores. Hence, our study suggests that both aging scores capture different aspects of the aging process.

Improving performance of heart rate time series classification by grouping subjects

Unlike the more commonly analyzed ECG or PPG data for activity classification, heart rate time series data is less detailed, often noisier and can contain missing data points. Using the BigIdeasLab_STEP dataset, which includes heart rate time series annotated with specific tasks performed by individuals, we sought to determine if general classification was achievable. Our analyses showed that the accuracy is sensitive to the choice of window/stride size. Moreover, we found variable classification performances between subjects due to differences in the physical structure of their hearts. Various techniques were used to minimize this variability. First of all, normalization proved to be a crucial step and significantly improved the performance. Secondly, grouping subjects and performing classification inside a group helped to improve performance and decrease inter-subject variability. Finally, we show that including handcrafted features as input to a deep learning (DL) network improves the classification performance further. Together, these findings indicate that heart rate time series can be utilized for classification tasks like predicting activity. However, normalization or grouping techniques need to be chosen carefully to minimize the issue of subject variability.

Federated K-means Clustering

Federated learning is a technique that enables the use of distributed datasets for machine learning purposes without requiring data to be pooled, thereby better preserving privacy and ownership of the data. While supervised FL research has grown substantially over the last years, unsupervised FL methods remain scarce. This work introduces an algorithm which implements K-means clustering in a federated manner, addressing the challenges of varying number of clusters between centers, as well as convergence on less separable datasets.