Abstract:In recent years, Generative Adversarial Networks (GANs) have seen significant advancements, leading to their widespread adoption across various fields. The original GAN architecture enables the generation of images without any specific control over the content, making it an unconditional generation process. However, many practical applications require precise control over the generated output, which has led to the development of conditional GANs (cGANs) that incorporate explicit conditioning to guide the generation process. cGANs extend the original framework by incorporating additional information (conditions), enabling the generation of samples that adhere to that specific criteria. Various conditioning methods have been proposed, each differing in how they integrate the conditioning information into both the generator and the discriminator networks. In this work, we review the conditioning methods proposed for GANs, exploring the characteristics of each method and highlighting their unique mechanisms and theoretical foundations. Furthermore, we conduct a comparative analysis of these methods, evaluating their performance on various image datasets. Through these analyses, we aim to provide insights into the strengths and limitations of various conditioning techniques, guiding future research and application in generative modeling.
Abstract:Over the last five years, deep generative models have gradually been adopted for various tasks in biological research. Notably, image-to-image translation methods showed to be effective in revealing subtle phenotypic cell variations otherwise invisible to the human eye. Current methods to achieve this goal mainly rely on Generative Adversarial Networks (GANs). However, these models are known to suffer from some shortcomings such as training instability and mode collapse. Furthermore, the lack of robustness to invert a real image into the latent of a trained GAN prevents flexible editing of real images. In this work, we propose PhenDiff, an image-to-image translation method based on conditional diffusion models to identify subtle phenotypes in microscopy images. We evaluate this approach on biological datasets against previous work such as CycleGAN. We show that PhenDiff outperforms this baseline in terms of quality and diversity of the generated images. We then apply this method to display invisible phenotypic changes triggered by a rare neurodevelopmental disorder on microscopy images of organoids. Altogether, we demonstrate that PhenDiff is able to perform high quality biological image-to-image translation allowing to spot subtle phenotype variations on a real image.