The interrupted-sampling repeater jamming (ISRJ) is coherent and has the characteristic of suppression and deception to degrade the radar detection capabilities. The study focuses on anti-ISRJ techniques in the waveform domain, primarily capitalizing on waveform design and and anti-jamming signal processing methods in the waveform domain. By exploring the relationship between waveform-domain adaptive matched filtering (WD-AMF) output and waveform-domain signals, we demonstrate that ISRJ can be effectively suppressed when the transmitted waveform exhibits waveform-domain complementarity. We introduce a phase-coded (PC) waveform set with waveform-domain complementarity and propose a method for generating such waveform sets of arbitrary code lengths. The performance of WD-AMF are further developed due to the designed waveforms, and simulations affirm the superior adaptive anti-jamming capabilities of the designed waveforms compared to traditional ones. Remarkably, this improved performance is achieved without the need for prior knowledge of ISRJ interference parameters at either the transmitter or receiver stages.