Sub-Meter Tree Height Mapping of California using Aerial Images and LiDAR-Informed U-Net Model

Tree canopy height is one of the most important indicators of forest biomass, productivity, and species diversity, but it is challenging to measure accurately from the ground and from space. Here, we used a U-Net model adapted for regression to map the canopy height of all trees in the state of California with very high-resolution aerial imagery (60 cm) from the USDA-NAIP program. The U-Net model was trained using canopy height models computed from aerial LiDAR data as a reference, along with corresponding RGB-NIR NAIP images collected in 2020. We evaluated the performance of the deep-learning model using 42 independent 1 km$^2$ sites across various forest types and landscape variations in California. Our predictions of tree heights exhibited a mean error of 2.9 m and showed relatively low systematic bias across the entire range of tree heights present in California. In 2020, trees taller than 5 m covered ~ 19.3% of California. Our model successfully estimated canopy heights up to 50 m without saturation, outperforming existing canopy height products from global models. The approach we used allowed for the reconstruction of the three-dimensional structure of individual trees as observed from nadir-looking optical airborne imagery, suggesting a relatively robust estimation and mapping capability, even in the presence of image distortion. These findings demonstrate the potential of large-scale mapping and monitoring of tree height, as well as potential biomass estimation, using NAIP imagery.