Stochastic Gradient Descent (SGD) has become the method of choice for solving a broad range of machine learning problems. However, some of its learning properties are still not fully understood. We consider least squares learning in reproducing kernel Hilbert spaces (RKHSs) and extend the classical SGD analysis to a learning setting in Hilbert scales, including Sobolev spaces and Diffusion spaces on compact Riemannian manifolds. We show that even for well-specified models, violation of a traditional benchmark smoothness assumption has a tremendous effect on the learning rate. In addition, we show that for miss-specified models, preconditioning in an appropriate Hilbert scale helps to reduce the number of iterations, i.e. allowing for "earlier stopping".