Spiking neural networks play an important role in brain-like neuromorphic computations and in studying working mechanisms of neural circuits. One drawback of training a large scale spiking neural network is that an expensive cost of updating all weights is required. Furthermore, after training, all information related to the computational task is hidden into the weight matrix, prohibiting us from a transparent understanding of circuit mechanisms. Therefore, in this work, we address these challenges by proposing a spiking mode-based training protocol. The first advantage is that the weight is interpreted by input and output modes and their associated scores characterizing importance of each decomposition term. The number of modes is thus adjustable, allowing more degrees of freedom for modeling the experimental data. This reduces a sizable training cost because of significantly reduced space complexity for learning. The second advantage is that one can project the high dimensional neural activity in the ambient space onto the mode space which is typically of a low dimension, e.g., a few modes are sufficient to capture the shape of the underlying neural manifolds. We analyze our framework in two computational tasks -- digit classification and selective sensory integration tasks. Our work thus derives a mode-based learning rule for spiking neural networks.