The principal reason for measuring mental workload is to quantify the cognitive cost of performing tasks to predict human performance. Unfortunately, a method for assessing mental workload that has general applicability does not exist yet. This research presents a novel self-supervised method for mental workload modelling from EEG data employing Deep Learning and a continuous brain rate, an index of cognitive activation, without requiring human declarative knowledge. This method is a convolutional recurrent neural network trainable with spatially preserving spectral topographic head-maps from EEG data to fit the brain rate variable. Findings demonstrate the capacity of the convolutional layers to learn meaningful high-level representations from EEG data since within-subject models had a test Mean Absolute Percentage Error average of 11%. The addition of a Long-Short Term Memory layer for handling sequences of high-level representations was not significant, although it did improve their accuracy. Findings point to the existence of quasi-stable blocks of learnt high-level representations of cognitive activation because they can be induced through convolution and seem not to be dependent on each other over time, intuitively matching the non-stationary nature of brain responses. Across-subject models, induced with data from an increasing number of participants, thus containing more variability, obtained a similar accuracy to the within-subject models. This highlights the potential generalisability of the induced high-level representations across people, suggesting the existence of subject-independent cognitive activation patterns. This research contributes to the body of knowledge by providing scholars with a novel computational method for mental workload modelling that aims to be generally applicable, does not rely on ad-hoc human-crafted models supporting replicability and falsifiability.