K-Means Clustering With Incomplete Data with the Use of Mahalanobis Distances

Effectively applying the K-means algorithm to data with missing values remains an important research area due to its impact on applications that rely on K-means clustering. Recent studies have shown that integrating imputation directly into the K-means algorithm yields superior results compared to handling imputation separately. In this work, we extend this approach by developing a unified K-means algorithm that incorporates Mahalanobis distances, instead of the traditional Euclidean distances, which previous research has shown to perform better for clusters with elliptical shapes. We conduct extensive experiments on synthetic datasets containing up to ten elliptical clusters, as well as the IRIS dataset. Using the Adjusted Rand Index (ARI) and Normalized Mutual Information (NMI), we demonstrate that our algorithm consistently outperforms both standalone imputation followed by K-means (using either Mahalanobis or Euclidean distance) and recent K-means algorithms that integrate imputation and clustering for handling incomplete data. These results hold across both the IRIS dataset and randomly generated data with elliptical clusters.