From a process development perspective, diamond growth via chemical vapor deposition has made significant strides. However, challenges persist in achieving high quality and large-area material production. These difficulties include controlling conditions to maintain uniform growth rates for the entire growth surface. As growth progresses, various factors or defect states emerge, altering the uniform conditions. These changes affect the growth rate and result in the formation of crystalline defects at the microscale. However, there is a distinct lack of methods to identify these defect states and their geometry using images taken during the growth process. This paper details seminal work on defect segmentation pipeline using in-situ optical images to identify features that indicate defective states that are visible at the macroscale. Using a semantic segmentation approach as applied in our previous work, these defect states and corresponding derivative features are isolated and classified by their pixel masks. Using an annotation focused human-in-the-loop software architecture to produce training datasets, with modules for selective data labeling using active learning, data augmentations, and model-assisted labeling, our approach achieves effective annotation accuracy and drastically reduces the time and cost of labeling by orders of magnitude. On the model development front, we found that deep learning-based algorithms are the most efficient. They can accurately learn complex representations from feature-rich datasets. Our best-performing model, based on the YOLOV3 and DeeplabV3plus architectures, achieved excellent accuracy for specific features of interest. Specifically, it reached 93.35% accuracy for center defects, 92.83% for polycrystalline defects, and 91.98% for edge defects.