Abstract:Crop yield prediction is essential for agricultural planning but remains challenging due to the complex interactions between weather, climate, and management practices. To address these challenges, we introduce a deep learning-based multi-model called Climate-Management Aware Vision Transformer (CMAViT), designed for pixel-level vineyard yield predictions. CMAViT integrates both spatial and temporal data by leveraging remote sensing imagery and short-term meteorological data, capturing the effects of growing season variations. Additionally, it incorporates management practices, which are represented in text form, using a cross-attention encoder to model their interaction with time-series data. This innovative multi-modal transformer tested on a large dataset from 2016-2019 covering 2,200 hectares and eight grape cultivars including more than 5 million vines, outperforms traditional models like UNet-ConvLSTM, excelling in spatial variability capture and yield prediction, particularly for extreme values in vineyards. CMAViT achieved an R2 of 0.84 and a MAPE of 8.22% on an unseen test dataset. Masking specific modalities lowered performance: excluding management practices, climate data, and both reduced R2 to 0.73, 0.70, and 0.72, respectively, and raised MAPE to 11.92%, 12.66%, and 12.39%, highlighting each modality's importance for accurate yield prediction. Code is available at https://github.com/plant-ai-biophysics-lab/CMAViT.