Sparse clustering via the Deterministic Information Bottleneck algorithm

Cluster analysis relates to the task of assigning objects into groups which ideally present some desirable characteristics. When a cluster structure is confined to a subset of the feature space, traditional clustering techniques face unprecedented challenges. We present an information-theoretic framework that overcomes the problems associated with sparse data, allowing for joint feature weighting and clustering. Our proposal constitutes a competitive alternative to existing clustering algorithms for sparse data, as demonstrated through simulations on synthetic data. The effectiveness of our method is established by an application on a real-world genomics data set.

A Deterministic Information Bottleneck Method for Clustering Mixed-Type Data

In this paper, we present an information-theoretic method for clustering mixed-type data, that is, data consisting of both continuous and categorical variables. The method is a variant of the Deterministic Information Bottleneck algorithm which optimally compresses the data while retaining relevant information about the underlying structure. We compare the performance of the proposed method to that of three well-established clustering methods (KAMILA, K-Prototypes, and Partitioning Around Medoids with Gower's dissimilarity) on simulated and real-world datasets. The results demonstrate that the proposed approach represents a competitive alternative to conventional clustering techniques under specific conditions.

A general framework for implementing distances for categorical variables

The degree to which subjects differ from each other with respect to certain properties measured by a set of variables, plays an important role in many statistical methods. For example, classification, clustering, and data visualization methods all require a quantification of differences in the observed values. We can refer to the quantification of such differences, as distance. An appropriate definition of a distance depends on the nature of the data and the problem at hand. For distances between numerical variables, there exist many definitions that depend on the size of the observed differences. For categorical data, the definition of a distance is more complex, as there is no straightforward quantification of the size of the observed differences. Consequently, many proposals exist that can be used to measure differences based on categorical variables. In this paper, we introduce a general framework that allows for an efficient and transparent implementation of distances between observations on categorical variables. We show that several existing distances can be incorporated into the framework. Moreover, our framework quite naturally leads to the introduction of new distance formulations and allows for the implementation of flexible, case and data specific distance definitions. Furthermore, in a supervised classification setting, the framework can be used to construct distances that incorporate the association between the response and predictor variables and hence improve the performance of distance-based classifiers.