In the present paper a novel graph-based approach to the shape decomposition problem is addressed. The shape is appropriately transformed into a visibility graph enriched with local neighborhood information. A two-step diffusion process is then applied to the visibility graph that efficiently enhances the information provided, thus leading to a more robust and meaningful graph construction. Inspired by the notion of a clique as a strict cluster definition, the dominant sets algorithm is invoked, slightly modified to comport with the specific problem of defining shape parts. The cluster cohesiveness and a node participation vector are two important outputs of the proposed graph partitioning method. Opposed to most of the existing techniques, the final number of the clusters is determined automatically, by estimating the cluster cohesiveness on a random network generation process. Experimental results on several shape databases show the effectiveness of our framework for graph based shape decomposition.